generate command

Usage

nf-test generate <TEST_CASE_TYPE> <NEXTFLOW_FILES>

Supported Types

process

workflow

pipeline

function

Examples

Create a test case for a process:

nf-test generate process modules/local/salmon_index.nf

Create a test cases for all processes in folder modules:

nf-test generate process modules/**/*.nf

Create a test case for a sub workflow:

nf-test generate workflow workflows/some_workflow.nf

Create a test case for the whole pipeline:

nf-test generate pipeline main.nf

Create a test case for each function in file functions.nf:

nf-test generate function functions.nf